NGS INTERNSHIP ( 2 MONTHS )
The 2-month NGS Internship offers hands-on training in Next-Generation Sequencing data analysis, covering core bioinformatics skills like Python, R, Biopython, and NGS-DNA sequencing workflows. Participants also develop practical expertise through projects and career readiness sessions, earning a certificate upon completion
Course Description
Foundational Bioinformatics: Explore essential concepts in genomic bioinformatics, Linux operations, and cloud technology, laying the groundwork for further study.
Python Mastery: Master Python programming from basics to advanced topics crucial for bioinformatics applications.
Biopython and NGS Analysis: Dive into Biopython for sequence manipulation and leverage its capabilities for NGS data analysis.
R Programming Fundamentals: Learn essential R programming skills and discover its application in various bioinformatics tasks.
Introduction to Bioconductor: Familiarize yourself with Bioconductor for sequence analysis and effective data visualization in genomics.
NGS-DNA Seq Analysis: Delve into DNA Seq data analysis techniques, including data retrieval, read mapping, and variant detection, to uncover insights from genomic data.
HR Session: Develop soft skills and prepare for career advancement through HR sessions covering resume building, interview skills, and professional networking.
What You'll Learn
Gain foundational knowledge in bioinformatics and DNA Seq data analysis.
Master Python for bioinformatics applications.
Utilize Biopython effectively for biological sequence manipulation.
Acquire R skills for statistical analysis in bioinformatics.
Grasp the role of Bioconductor in genomic data analysis.
Curriculum
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Topic 1 = Introduction and Installation of R
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Topic 2 = Data Types in R
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Topic 3 = Data Structure
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Topic 4 = File Handling
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Topic 5 =Control Structure
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Topic 6 = Function
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Topic 7 = Package Management
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Topic 8 = Data Manipulation
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Topic 9 = Data Visualization
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Topic 10 = Statistical Analysis
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Day 1
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Day 2
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Day 3
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Day 4
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Day 5
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T1= Introduction to NGS and DNAseq
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T2= Basic Terminologies in NGS
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T3= Understanding of SRA database
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T4= Tools installation in Linux for Variation Calling
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T5= Quality control
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T6= Trimming of Reads
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T7= Indexing of Genome and Alignment of Reads
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T8= Variation calling using GATK
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T9= Variant Effect Prediction(VEP)
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T10= Variation Visualization (IGV)
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