CRISPR CAS Hands-On Workshop
Master computational guide RNA design, off-target analysis, and precision genome editing. Deploy AI-powered deep learning models to predict on-target cutting efficiency and optimize your CRISPR experiments.
Course Description
This comprehensive, hands-on workshop delivers the core computational skills required to design, evaluate, and execute precision CRISPR genome editing workflows. As genetic engineering rapidly evolves, traditional trial-and-error methods are being replaced by AI-driven predictive algorithms. In this practical technical training, you will bridge the gap between genomic theory and functional bioinformatics by navigating the entire in silico design pipeline. Participants will learn to leverage advanced deep learning tools to evaluate target gene architecture, identify optimal protospacer adjacent motifs (PAM), and rank single-guide RNAs (sgRNAs) with maximum on-target efficacy. Moving beyond basic lookups, the curriculum explores the mechanics of mismatch tolerance, chromatin accessibility, and structural molecular visualization of Cas complexes. By combining deep-learning-based on-target scoring with exhaustive, genome-wide off-target analysis, you will gain the predictive confidence needed to mitigate unwanted mutations. Whether you are targeting protein-coding exons, non-coding introns, or planning high-throughput functional genomic screens, this masterclass equips you with the end-to-end analytical framework to design bulletproof gene-editing experiments.
What You'll Learn
Target Identification: Extract genomic sequences, evaluate exon-intron boundaries, and map target loci using primary database browsers.
AI-Driven gRNA Selection: Utilize machine learning and deep learning algorithms to predict and score on-target cleavage efficiency.
Off-Target Mitigation: Run comprehensive alignment checks to detect mismatch tolerances, cross-reactivity, and prospective genomic side effects.
HDR Template Architecture: Design custom homology-directed repair (HDR) single-stranded oligo templates for precise knock-in mutations.
Structural Visualization: Interrogate the 3D molecular structures of Cas9/Cas12a complexes to understand spatial constraints and PAM recognition.
Curriculum
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Module 1: Deep dive into the architecture of CRISPR systems, PAM recognition motifs, and the biochemistry of Cas nucleases.
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Module 2: Digital execution of target selection, in silico guide RNA layout optimization, and functional primer array mapping.
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Module 3: Wet-lab preparation of plasmid delivery cassettes, handling gRNA-Cas9 ribonucleoprotein (RNP) matrices, and cell lines transfection protocols.
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Module 4: Extraction of modified genomic DNA pools followed by target locus amplification using high-fidelity PCR assays.
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Module 5: Quantitative analysis of genomic modifications utilizing mismatch-sensitive endonuclease tracking assays and sequence alignment algorithms.
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