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Instructor Name

Dr. Omics (DP)

Category

NGS

Reviews

0 (0 Rating)

Course Curriculum

1 (14-10-2024)Day 1
1 Hour


2 (15-10-2024) day 2
1 Hour


3 (16-10-2024) Day 3
1 Hour


4 (17-10-2024) day 4
1 Hour


5 (18-10-2024) Day 5
1 Hour


1 M1T1 = Introduction to Bioinformatics
59 Min


2 M1T2 = NCBI Database Overview
1 Hour


3 M1T3 = Genbank Database Practical Exercises
1 Hour


4 M1T4 = UCSC Genome Browser Overview
59 Min


5 M1T5 = UCSC Genome Browser Hands-on Exercises
59 Min


6 M1T6 = Pubmed Database Introduction
1 Hour


7 M1T7 = Clinvar Database Overview
1 Hour


8 M1T8 = KEGG Database Overview and Exercises
59 Min


9 M1T9 = Protein Databases (UniProt)
1 Hour


10 M1T10 = Protein Databases (PDB)
1 Hour


11 M1T11 = Online BLAST Introduction and Exercises
59 Min


12 M1T12 = Standalone BLAST Setup and Exercises
1 Hour


13 M1T13 = Standalone BLAST Advanced Exercises
1 Hour


14 M1T14 = Multiple Sequence Alignment with ClustalW
58 Min


15 M1T15 = Multiple Sequence Alignment with MEGA
1 Hour


1 M2T1 = Overview and Installation of Linux
59 Min


2 M2T2 = Basic Linux Commands
59 Min


3 M2T3 = Advanced Linux Commands
1 Hour


4 M2T4 = Package Management using Repository
59 Min


5 M2T5 = Package Management using Source Code
59 Min


1 M3T1 = Introduction to Python
59 Min


2 M3T2= Data Types
59 Min


3 M3T3= String Handling
59 Min


4 M3T4= Data Structure
59 Min


5 M3T5=Control Structure
59 Min


6 M3T6 = Function
59 Min


7 M3T7= File Handling
59 Min


8 M3T8= Data Manipulation
1 Hour


9 M3T9= Data Visualization
59 Min


10 M3T10= Biopython
1 Hour


1 M4T1 = Introduction and Installation of R
59 Min


2 M4T2= Data Types in R
1 Hour


3 M4T3= Data Structure
59 Min


4 M4T4= File Handling
59 Min


5 M4T5=Control Structure
59 Min


6 M4T6 = Function
59 Min


7 M4T7= Package Management
59 Min


8 M4T8= Data Manipulation
59 Min


9 M4T9= Data Visualization
1 Hour


10 M4T10= Statistical Analysis
1 Hour


1 Day 1
1 Hour


2 Day 2
1 Hour


3 Day 3
59 Min


4 day 4
1 Hour


5 Day 5
1 Hour


1 M6T1= Introduction to NGS and DNAseq
1 Hour


2 M6T2= Basic Terminologies in NGS
1 Hour


3 M6T3= Understanding of SRA database
59 Min


4 M6T4= Tools installation in Linux for Variation Calling(N614624)
1 Hour


5 M6T5= Quality control (N614624)
1 Hour


6 M6T6= Trimming of Reads (N614624)
1 Hour


7 M6T7= Indexing of Genome and Alignment of Reads (N614624)
1 Hour


8 M6T8= Variation calling using GATK(N614624)
1 Hour


9 M6T9= Variant Effect Prediction(VEP)(N614624)
1 Hour


10 M6T10= Variation Visualization (IGV)(N614624)
1 Hour


1 M7T2=Tools installation in Linux for Gene Expression analysis
59 Min


2 M7T3=Quality control and Trimming of reads
1 Hour


3 M7T4=Indexing of Genome and Alignment of Reads
59 Min


4 M7T5=Normalization of Data (Cufflinks)
59 Min


5 M7T6=Merging of Data and Differential expression of genes
1 Hour


6 M7T7=Understanding of DEG results
59 Min


7 M7T8=Annotation of DEG
1 Hour


8 M7T9=Functional and Pathway Enrichment Analysis
59 Min


9 M7T10=Network Analysis
59 Min


10 M7T1=Introduction to RNAseq and it’s basic terminologies
1 Hour


1 M8T1= Tools installation for De-novo RNAseq
59 Min


2 M8T2= Tools installation for De-novo RNAseq
59 Min


3 M8T3= Data downlading and Quality control
59 Min


4 M8T4= Assembly Creation
1 Hour


5 M8T5= Abundance count estimation
59 Min


6 M8T6= Generation of count matrix and DEG
1 Hour


7 M8T7= BLAST
59 Min


8 M8T8= Understanding the DEG results
59 Min


9 M8T9= Annotation of DEGs
59 Min


10 M8T10= Encrichment Analysis
59 Min


1 "M9T1= Introduction to metagenomics "
1 Hour


2 M9T2= Tools installation for metagenomics
1 Hour


3 M9T3= Data Downloading
1 Hour


4 M9T4= Quality control & Trimming
59 Min


5 M9T5= Data importing in Qimme2
59 Min


6 M9T5= Data importing in Qimme2
59 Min


7 M9T6= Data quality check using DADA2
59 Min


8 M9T7= Phylogentic Analysis
58 Min


9 M9T8= Taxonomy Analysis
59 Min


10 M9T9= Krona Plot
59 Min


11 M9T0= Phylogenetic tree construction
59 Min


1 M10T1= Introduction to MIcroarray
1 Hour


2 M10T2= Introduction to Microarray
59 Min


3 M10T3= Data Downloading
59 Min


4 M10T4= Microarray Pipeline upto Normalization
58 Min


5 M10T5= Microarray Pipeline till DEG
59 Min


6 M10T6= Annotation of DEG
59 Min


7 M10T7= Encrichment Analysis
59 Min


8 M10T8= Network Analysis
59 Min


9 M10T9= Volcano Plot
59 Min


10 M10T10= Heatmap
59 Min


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NGS Internship(6 Months) (N614624)

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