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Instructor Name

Super admin

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Core Courses

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Course Requirements

  • Laptop with Linux installed (WSL) 
  • Internet connection for software installation and updates

Course Description

Welcome to the CRISPR/Cas9 Analysis: Mastering the Genome Editing Revolution workshop! Over five days, you'll delve into the world of CRISPR/Cas9, from understanding its fundamentals to mastering advanced NGS data analysis techniques. This hands-on course will guide you through data downloading, quality control, variant calling with GATK, and variant annotation. Each session is designed to build your expertise in genome editing, empowering you to apply these cutting-edge skills in your research. Join us and take the next step in mastering CRISPR/Cas9 technology!

Course Outcomes

Understand CRISPR/Cas9 and NGS Fundamentals: Gain a solid foundation in CRISPR/Cas9 technology and essential NGS concepts.

Download and Manage Genomic Data: Effectively use the SRA database to download and prepare sequencing data for analysis.

Perform Quality Control and Read Mapping: Execute quality checks, trim adapters, and map sequencing reads to a reference genome.

Conduct Variant Calling with GATK: Identify genetic variations using the Genome Analysis Toolkit (GATK).

Annotate and Interpret Variants: Analyze and interpret the functional impact of CRISPR-induced genetic variants.

Rules & Regulations

  • Attendance and Participation: Attendance is mandatory to ensure a comprehensive learning experience.
  •  Discipline: Maintain punctuality and respect in the sessions. Engage actively and interact respectfully with instructors and peers.
  • Certification: A certificate will be awarded upon workshop completion.

Course Curriculum

1 1. CRISPR introduction
13 Min


2 2. NGS terminologies
23 Min


3 3. Data Downloding using SRA database
33 Min


4 4. Quality control
11 Min


5 5. Adapter Trimming
8 Min


6 6. Mapping of reads to Refereence Genome
12 Min


7 7. Sorting And duplicate Removal of Aligned Reads
10 Min


8 8. Variation Calling
19 Min


9 9. Undersanding VCF file
15 Min


10 10. Variant Annotation
12 Min


Instructor

Administrator

Super admin

Administrator

Lorem Ipsum is simply dummy text of the printing and typesetting industry. Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book.

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33 Students
30 Courses

Lorem Ipsum is simply dummy text of the printing and typesetting industry. Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book. It has survived not only five centuries, but also the leap into electronic typesetting, remaining essentially unchanged. It was popularised in the 1960s with the release of Letraset sheets containing Lorem Ipsum passages, and more recently with desktop publishing software like Aldus PageMaker including versions of Lorem Ipsum.

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CRISPR Data Analysis Recorded Course(Oct 2024)

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